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The ECPGR
Vigna Database Austrian Agency for Health and Food Safety - AGES Linz, Wieningerstrasse 8, A - 4020 Linz, Austria |
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Datenbank Beschreibung / Database description Characterization data
Die Daten der ECP/GR Phaseolus Datenbank sind zusammengestellt nach den Empfehlungen der
The structure of the ECP/GR Phaseolus Database follows the principles of the
FAO/IPGRI Multi-Crop Passport
Descriptors list (EURISCO Descriptors)
1. Institute code (INSTCODE)
Code of the institute where the accession is maintained. The codes consist of the 3-letter ISO 3166 country code of the country where the institute is located plus a number. The current set of Institute Codes is available from the FAO website http://apps3.fao.org/wiews/2. Accession number (ACCENUMB)
This number serves as a unique identifier for accessions within a genebank collection, and is assigned when a sample is entered into the genebank collection.3. Collecting number (COLLNUMB)
Original number assigned by the collector(s) of the sample, normally composed of the name or initials of the collector(s) followed by a number. This number is essential for identifying duplicates held in different collections.4. Collecting institute code (COLLCODE)
Code of the Institute collecting the sample. If the holding institute has collected the material, the collecting institute code (COLLCODE) should be the same as the holding institute code (INSTCODE). Follows INSTCODE standard.5. Genus (GENUS)
Genus name for taxon, in latin. Initial uppercase letter required.6. Species (SPECIES)
Specific epithet portion of the scientific name, in latin, in lowercase letters. Following abbreviation is allowed: 'sp.'7. Species authority (SPAUTHOR)
The authority for the species name.8. Subtaxa (SUBTAXA)
Subtaxa can be used to store any additional taxonomic identifier, in latin. Following abbreviations are allowed: 'subsp.' (for subspecies); 'convar.' (for convariety); 'var.' (for variety); 'f.' (for form).9. Subtaxa authority (SUBTAUTHOR)
The subtaxa authority at the most detailed taxonomic level.10. Common crop name (CROPNAME)
Name of the crop in colloquial language, preferably English (e.g. 'malting barley', 'cauliflower')11. Accession name (ACCENAME)
Either a registered or other formal designation given to the accession. First letter uppercase. Multiple names separated with semicolon without space. (e.g.: Rheinische Vorgebirgstrauben;Emma;Avlon)12. Acquisition date (ACQDATE)
Date on which the accession entered the collection where YYYY is the year, MM is the month and DD is the day. Missing data (MM or DD) should be indicated with hyphens. Leading zeros are required. (e.g.: 1968----;20020620)13. Country of origin (ORIGCTY)
Code of the country in which the sample was originally collected. Use the 3-letter ISO 3166-1 extended country codes.14. Location of collecting site (COLLSITE)
Location information below the country level that describes where the accession was collected. This might include the distance in kilometres and direction from the nearest town, village or map grid reference point, (e.g. 7 km south of Curitiba in the state of Parana).15. Latitude of collecting site (LATITUDE)
Degree (2 digits) minutes (2 digits), and seconds (2 digits) followed by N (North) or S (South) (e.g. 103020S). Every missing digit (minutes or seconds) should be indicated with a hyphen. Leading zeros are required (e.g. 10----S; 011530N; 4531--S).16. Longitude of collecting site (LONGITUDE)
Degree (3 digits), minutes (2 digits), and seconds (2 digits) followed by E (East) or W (West) (e.g. 0762510W). Every missing digit (minutes or seconds) should be indicated with a hyphen. Leading zeros are required (e.g. 076----W).17. Elevation of collecting site (ELEVATION)
Elevation of collecting site expressed in metres above sea level. Negative values are allowed.18. Collecting date of sample (COLLDATE)
Collecting date of the sample as YYYYMMDD. Missing data (MM or DD) should be indicated with hyphens. Leading zeros are required.19. Breeding institute code (BREDCODE)
FAO Institute code of the institute that has bred the material.20. Biological status of accession (SAMPSTAT)
The coding scheme proposed can be used at 3 different levels of detail: either by using the general codes (in boldface) such as 100, 200, 300, 400 or by using the more specific codes such as 110, 120 etc.100) Wild
- 110) Natural
- 120) Semi-natural/wild
200) Weedy
300) Traditional cultivar/landrace
400) Breeding/research material
- 410) Breeder's line
- 411) Synthetic population
- 412) Hybrid
- 413) Founder stock/base population
- 414) Inbred line (parent of hybrid cultivar)
- 415) Segregation population
500) Advanced/improved cultivar
999) Other (Elaborate in REMARKS field)21. Ancestral data (ANCEST)
Information about either pedigree or other description of ancestral information (i.e. parent variety in case of mutant or selection). For example a pedigree 'Hanna/7*Atlas//Turk/8*Atlas' or a description 'mutation found in Hanna', 'selection from Irene' or 'cross involving amongst others Hanna and Irene'.22. Collecting/acquisition source (COLLSRC)
The coding scheme proposed can be used at 2 different levels of detail: either by using the general codes (in boldface) such as 10, 20, 30, 40 or by using the more specific codes such as 11, 12 etc.10) Wild habitat
- 11) Forest/woodland
- 12) Shrubland
- 13) Grassland
- 15) Aquatic habitat
20) Farm or cultivated habitat
- 21) Field
- 22) Orchard
- 23) Backyard, kitchen or home garden (urban, peri-urban or rural)
- 24) Fallow land
- 25) Pasture
- 26) Farm store
- 27) Threshing floor
- 28) Park
30) Market or shop
40) Institute, Experimental station, Research organization, Genebank
50) Seed company
60) Weedy, disturbed or ruderal habitat
- 61) Roadside
- 62) Field margin
99) Other (Elaborate in REMARKS field)
23. Donor institute code (DONORCODE)
FAO Institute Code for the donor institute.24. Donor accession number (DONORNUMB)
Number assigned to an accession by the donor.25. Other identification (numbers) associated with the accession (OTHERNUMB)
Any other identification (numbers) known to exist in other collections for this accession. Use the following system: INSTCODE:ACCENUMB;INSTCODE:ACCENUMB;... INSTCODE and ACCENUMB follow the standard described above and are separated by a colon. Pairs of INSTCODE and ACCENUMB are separated by a semicolon without space. When the institute is not known, the number should be preceded by a colon.26. Location of safety duplicates (DUPLSITE)
FAO Institute Code of the institute where a safety duplicate of the accession is maintained. The code consist of the 3-letter ISO 3166 country code of the country where the institute is located plus a number.27. Type of germplasm storage (STORAGE)
If germplasm is maintained under different types of storage, multiple choices are allowed, separated by a semicolon (e.g. 20;30). (Refer to FAO/IPGRI Genebank Standards 1994 for details on storage type.)
- 10) Seed collection
- 11) Short term
- 12) Medium term
- 13) Long term
- 20) Field collection
- 30) In vitro collection (Slow growth)
- 40) Cryopreserved collection
- 99) Other (elaborate in REMARKS field)
28. Remarks (REMARKS)
The remarks field is used to add notes or to elaborate on descriptors with value 99 or 999 (=Other). Prefix remarks with the field name they refer to and a colon . Separate remarks referring to different fields are separated by semicolons without space. (e.g. COLLSRC:roadside)29. Decoded collecting institute (COLLDESCR)
Brief name and location of the collecting institute. Only to be used if COLLCODE can not be used since the FAO Institution Code for this institute is not (yet) available. (e.g. Tuinartikelen Jan van Zomeren, Arnhem, The Netherlands)30. Decoded breeding institute(BREDDESCR)
Brief name and location of the breeding institute. Only to be used if BREDCODE can not be used since the FAO Institution Code for this institute is not (yet) available. (e.g. CFFR rom Chile)31. Decoded donor institute (DONORDESCR)
Brief name and location of the donor institute. Only to be used if DONORCODE can not be used since the FAO Institution Code for this institute is not (yet) available. (e.g. Nelly Goodward, Groningen; The Netherlands)32. Decoded safety duplication location (DUPLDESCR)
Brief name and location of the institute maintaining the safety duplicate. Only to be used if DUPLSITE can not be used since the FAO Institution Code for this institute is not (yet) available. (e.g. Pakhoed Freezers Inc., Paramaribo, Surinam)33. Accession URL (ACCEURL)
URL linking to additional data about the accession either in the holding genebank or from another source. (e.g. www.cgn.wageningen-ur.nl/pgr/collections/passdata.asp?accenumb=CGN04848)
Characterization Descriptors list for Vigna (V. mungo and V. radiata)
Accession number (ACCENUMB)
Year of characterization (YEAR)
PLANT DATA
Hypocotyl colour (at 10 days after emergence) (HYPOCOLOR)1 Green
2 Green-purple
3 Purple
4 Dark purple
5 Mixed
6 Other (specify in the NOTES descriptor, 11)Growth habit (when first pod changes colour) (HABIT)
1 Erect (straight and prominent main stem with few branches ascend)
2 Semi-erect (main stem less prominent; branches do not touch ground)
3 Spreading (branches touch ground)Primary leaf shape (PRIMLEAFSHAPE)
1 Ovate-lanceolate
2 Lanceolate 3 Other (specify in the NOTES descriptor)Terminal leaflet shape (TERMLEAFSHAPE)
1 Deltate
2 Ovate
3 Ovate-lanceolate
4 Lanceolate
5 Rhombic
6 Obovate 7 Other (specify in the NOTES descriptor)1 Deltate 2 Ovate 3 Ovate-lanceolate 4 Lanceolate 5 Rhombic 6 Obovate
Leaf pubescence (LEAFPUB)
0 Glabrous
1 Very sparsely pubescent
3 Puberulent (sparsely pubescent)
5 Moderately pubescent
7 Densely pubescentPetiole colour (PETCOLOR)
1 Green
2 Green with purple spots
3 Greenish purple
4 Purple
5 Dark purple 6 Other (specify in the NOTES descriptor)Stem colour (STEMCOLOR)
1 Light green
2 Dark green
3 Light purple
4 Dark purple 5 Other (specify in the NOTES descriptor)INFLORESCENCE AND FRUIT
Pod attachment to peduncle (when pods are full grown) (PODERECT)
3 Pendant
5 Sub-erect
7 ErectImmature pod colour (PODCOLORIMM)
1 Light green
2 Dark green 3 Other (specify in the NOTES descriptor)Mature pod colour (PODCOLORMAT)
1 Straw
2 Tan
3 Brown
4 Brown and black
5 Black 6 Other (specify in the NOTES descriptor)
SEEDNumber of seeds per pod (SEEDPOD)
Mean number for 10 randomly selected pods
Seed shape (SEEDSHAPE)
1 Globose
2 Ovoid
3 Drum-shaped 4 Other (specify in the NOTES descriptor)Seed colour (SEEDCOLOR)
V. mungo
V. radiata
1 Light green
1 Light green
2 Green-brown
2 Dark green
3 Brown
3 Green-yellow
4 Chocolate
4 Yellow
5 Black
5 Brown
6 Mottled
6 Mottled
7 Other:
7 Other: (please specify in the NOTES descriptor)
Lustre / gloss on seed surface (SEEDGLOSS)
0 Absent (dull)
+ / 9 Present (shiny)Hilum (HILUM)
1 Concave (deeply furrowed aril prominent)
2 Non-concave (aril not prominent)1000 Seed weight / 1000 kernel mass [g] (TKM)
Weight of 1000 randomly selected seeds
Sowing date (SOWINGDATE)
Harvest date (first, second and third harvest or main harvest) (HARVESTDATE)
Days to emergence (from sowing to 50% seedling emergence (DAYSEMERGE)
Leaf colour (Intensity of green colour of trifoliate leaves at 50% flowering) (LEAFCOLOR)
3 Light green
5 Intermediate green
7 Dark greenPlant height [cm] (mean of 10 randomly selected drawn-out plants) (PLANTHEIGHT )
Days to flowering (from sowing to stage when 50% of plants have begun to flower) (DAYSFLOWER)
Calyx colour (CALYXCOLOR)
1 Green
2 Purplish green
3 Greenish purple 4 Other (specify in the NOTES descriptor)Corolla colour (Colour of wings and standard of freshly opened flowers) (COROLLACOLOR)
1 Yellow
2 Greenish yellow
3 Yellowish green
4 Green-purplish yellow 5 Other (specify in the NOTES descriptor)Pod pubescence (When first pod changes colour ) (PODPUB)
0 Glabrous
3 Puberulent (sparsely pubescent)
5 Moderately pubescent
7 Densely pubescentPod length [cm] (PODLENGTH)
Mean of 10 randomly selected mature pods
Pod shattering in the field (PODSHATTER)
0 Absent
+ / 9 PresentPod cross-section (of mature pod) (PODCROSS)
1 Semi-flat
2 RoundPod beak shape (PODBEAKSHAPE)
1 Hook
2 Knob 3 Other (specify in the NOTES descriptor)Constriction of pod between seeds (PODCONSTRICT)
When pod changes colour
0 Absent
+ / 9 PresentProtein content [%] (on dry seed weight bases) (PROTEIN)
Notes (NOTES)
Descriptors which were mentioned as OTHER in the above traits.
Genbank
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